These aren’t strictly centered beams, rather you’ve crossed some notes to the other staff. Try selecting all the notes in those beams and forcing their stems upwards. (Ah yes I see that F will get you there too, of course - worth understanding the underlying commands/logic perhaps though)
Well a forced centered beam and a cross-staff beam that is automatically centered between staves are different things in terms of edits made/active overrides but yes that could probably do with review.