My Specs:
Mac OSX Yosemite 10.10.4
MacBook Pro (Retina, 15-inch, Late 2013)
Processor 2.6 GHz Quad Intel Core i7
Memory 16 GB 1600MHz DDR3
Details to recreate issue:
(Please test this out on different audio files as this only happens sometimes).
Check to make sure you have all the hitpoints on an audio file, it does not have to be long, 2-4 bars should be fine.
Make sure the file is selected in the project window and go to the audio menu and select “bounce selection” then
check the hitpoints in the file again, you will see that some of the hitpoints go away and even with the threshold slider all the way down they don’t come back.