Cubase recalculated the latency every time you add a plugin, route or add tracks etc.
If you add plugins to your inputs the latency will naturally increase.
But hard to tell, as you don’t provide any computer and audiointerface details in your sig.
Did you activate any blacklisted plugins? Does this happen in an empty project? Are you on Mac OS 10.11 or lower? I don’t know an explanation, I’m just curious.
Mostly! Now I wonder whether keeping the plugin blacklisted, or (a lot more likely) upgrading to Sierra would fix this. El Capitan is known to have audio issues.
So I did some research and I found that there are ways I can change my configuration to allow for upgrading to Sierra. I have done this now.
The issue has not yet popped up again, AND the GUI slow-downs are much less severe. I’m somewhat amazed.
I don’t think I can yet say that the input latency issue is fixed or not, but at the very least it has reduced in frequency. We’ll see over the next week or so if it happens again or not.