Rendering MIDI triggered effects into audio

I use Stutter Edit 2 a lot, and I always use it on a separate MIDI channel to trigger the effects as it allows for much more creativity and flexibility, only problem I’ve run into is that whenever I want to render a track that has Stutter Edit 2 triggering effects over it so I can process them even further it won’t have my Stutter Edit 2 stuff baked into the rendered audio, if I freeze the track it’ll have the Stutter Edit stuff baked into the frozen track, but then I obviously can’t do any additional processing over it. Does anyone know how I can fix this?