What plug-ins/functions are affected by sample rate?

I mostly work at 96K for less latency. Reading a thread about the tuner, @Martin.Jirsak suggested that the tuner works fine. For me the tuner has never worked properly for bass, but then again I haven’t tracked bass at lower sample rates than 96K, so I haven’t used the tuner in other conditions.

I’ve also been fairly unamused by Audio Alignment for the last 4 or so versions, since it doesn’t seem to do anything for me. Could it be that it’s the sample rate at fault here again?

And if that’s so, what other plug-ins or functions could be affected by sample rate? People working at different sample rates day in and day out, have you noticed anything of the sort?